Bookmarks for Joseph Vallino

Programming-Numerical-Modeling

Ecosystem Modeling

Agrochemical-FIFRA Modeling Services
Center for Coastal And Land-Margin Research
Distributed Modular Spatial Ecosystem Modeling
The Echo Project
ECOSYSTEM MODELLING GROUP
Everglades Landscape Modeling
Facilitating High Performance, Collaborative Spatial Modeling
Gecko
Global CO2 model (simple)
Global Spatio-Temporal Modeling
List of Textbooks on Ecological Modelling
PLM Frameset
Spatial Modeling Environment
Stone Environmental Network
The Swarm Simulation System

Data Assimilation

Center for Ocean Data Assimilation and Modeling (CODAM)
Data Assimilation Office -- NASA Goddard Space Flight Center
EMC: Global Data Assimilation Group
Four-Dimensional Data Assimilation
Matear's Home Page
Modelling and Data assimilation
Recent developments in hydrologic data assimilation
The Objectives and Methods of Data Assimilation

OnLineLiterature

ACM: Computing Research Repository
ETNA
Homepage of Dr. Jens Struckmeier
Journal of Computational Analysis and Applications
Computational Science Education Project Homepage
Mathematical Modeling
Scientific Supercomputing:
Internet Software Guide for Engineers

Control Theory

Working Group on Software-WWW- Home Page

Fortran Stuff

C and Fortran (Carsten Arnholm)
ADIFOR- Automatic Differentiation of Fortran Codes
DIGITAL Fortran
DIGITAL Visual Fortran
f90doc homepage
Finger [email protected]
Fortran 90 for the Fortran 77 programmer
Fortran Links
Fortran Market
Fortran to Java (f2j) compiler
IVP Software by Jeff Cash (DEAs)
Kuck && Associates, Inc. (Optimizing and parallelization)
Object Oriented Fortran 90 Programming
Polyhedron Software Ltd - Index Page
NAG Fortran Library
PL Chapter
PSPLOT: Postscript for Technical Drawings
The Numerical Algorithms Group Ltd

Genetic Programming

Cool Economics Pack- gp
Christian Jacob's Home Page
Directory of -pub-genetic-programming
ENGM 624 - Genetic Algorithms Online Resources
Evolvica - Table of Contents
Evolvica: Evolutionary Algorithms with Mathematica: Downloading
FORTRAN Genetic Algorithm
The Genetic Algorithms Archive
ftp site on genetic programming
genetic-programming.org-Home-Page
Genetic Programming Research Summary
Genetic Programming
John Koza -- GP FTP Site
John Koza's Home Page
Meta-Genetic Programming: co-evolving the operators of variation
PGAPack Parallel Genetic Algorithm Library
Primordial Life 3.1
Software Packages
The Genetic Programming Notebook
The Genetic Programming Notebook
The Genetic Programming Software Notebook
Toolkit for Visual Genetic Programming
Topic: areas/genetic/gp/systems/

GNU-UNIX

CSEP - Anonymous FTP sites for public domain-sharware software
Directory of -pub-gnu-win32
Directory of -pub-tcl
DJGPP
Finger [email protected]
GNU's Not Unix!
gnu-win32 Help Text
The GNU-Win32 Project (Cygnus)
Kenton Lee- X Window System and OSF-Motif WWW Sites (HTML 3.0)
Linux Online - The Linux Home Page
(Linux) Distribution of ASCI-Red Work
pstoedit
SAL -- Scientific Applications on Linux
tcl and tk
Tcl-Tk Project At Sun Microsystems Laboratories
Untitled Document
X Consortium
X-apps FAQ- Tcl-Tk Information
Xtreme Home Page

Hydrodynamic -Food Web Models

--Facility for Ocean-Atmospheric Modeling and Visualization--
Canadian Hydraulics Centre
CCALMR Results: International Workshop on Long-Wave Runup Models
CFD codes list - free software
Coastal & Hydraulics Laboratory Software
Coastal Ocean Modeling at the USGS
Danish Hydraulic Institute's Home Page
Dartmouth Gulf of Maine Home Page
Delta Modeling Section Home Page
Ecological Modelling Group
Environmental Program -- Numerical Methods Lab
Environmental Modeling Research Laboratory
Environmental Modeling Center, NWS
Estuarine Flooding/Dewatering: Introduction
GFDL Modular Ocean Model Home Page
Global Ocean Export Production
HSPF
Institute of Marine and Coastal Sciences Home Document
Great Bay Estuary Modeling Project
Great Bay Simulation of Estuarine Flooding and Dewatering
Gulf of Maine Research Environmental Data Information Management System (REDIMS)
Mass Bay Circulation model (Signell)
MIKE SHE Overview
Modeling Resuspension of River Sediments using ARC-INFO
Numerical algorithms for surface water quality modelling
Ocean circulation models
Ocean circulation models
Ocean Processes Numerical Modelling Laboratory (OPNML)
Oceanography visualisation KINO - VISUMOD
Parallel TRIWAQ
POM Home Page
PSTSWM (Parallel Spectral Transform Shallow Water Model)
Ralph T. Cheng's Home Page
Rich Signell's Professional Page
San Francisco Bay Simulation
San Francisco Bay
SOC Bio Modelling Team - M.Fasham
Software And Applications (hydro info)
SPEM ocean model
Shallow Water Equation Codes
STSWM shallow water equation model
Stellwagen Bank Movies and Pictures
TABS Numerical Modeling System (RMA info)
USEPA HSPF
USGS Marine and Coastal Geology Program Home Page
Virtual Chesapeake Bay
Internet Software Guide for Engineers
Coastal & Hydraulics Laboratory Software
NUMERICAL TECHNOLOGIES INC.

Mathematica

Wolfram Documents

How do I write a matrix to a file?

Differential Equations
Karl's MMA page
LiveGraphics3D Homepage
Mathematica Benchmark Site
Mathematica HTML Notebooks
Mathematica in Education and Research
Mathematica Telos Pulications
Mathematica World
MathGroup
MathSource Home Page
Notation Distribution Page
OpenGL Viewer for Mathematica
OpenGL for the Macintosh by Conix
POV-Ray - the Persistence of Vision Raytracer
Scientific Web - Modules and add-on's for Mathematica
VisualDSolve: Home Page
VRMLConvert Documentation
Wolfram Research Developer Program
Wolfram Research, Inc.
Xah: Great Math Programs
Xah's Homepage

Misc Models

http---www.lehigh.edu-~wes1-co2-co2.html

ODE Analysis

AUTO 3 CAEN - University of Michigan
AUTO
Bifurcation Laboratory
CAN Distribution of Software Products
Chaos Software
CONTENT
DSTOOL (Directory of /pub/dstool)
Dynamical Systems Links
Index of -caendoc-math-Src-auto-
Investigating and Visualizing the Dynastic Cycle
Keith Briggs' home page
NONLINEAR DYNAMICS/CHAOS
Nonlinear Dynamics and Chaos Contents
SANTIS Homepage
sci.nonlinear FAQ (January 1998)
SYNODE
XPP TABLE OF CONTENTS

Optimization

BARON
Ciyou Zhu's Home Page (Optimization)
Decision Tree for Optimization Software
Directory of -pub-cGOP
DONLP2 and related software for nonlinear programming
FORTRAN Genetic Algorithm
Global (Optimization)
Global Optimization- Events, Publications, People
Global (and Local) Optimization
http---http.icsi.berkeley.edu-~storn-code.html
Index of -Optimization-Software-
Introduction to Convex Optimization with Engineering Applications
LANCELOT
Lester Ingber's Code and Reprint Archive (ASA)
Lester Ingber's Code and Reprint Archive
Linear Programming Short Course
MDOB Homepagel
MINOPT
NEOS Guide- Optimization Software
NEOS Server
nlpe.htm (parameter estimation)
Optimization Frequently Asked Questions
Optimization Methods and Software (Journal)
Optimization via the Internet
Parameter Estimation via Genetic Algorithm (PEGA)
PEST- model-independent parameter estimation
PORT-3
R. Baker Kearfott (optima routines)
R. Baker Kearfott
Robert J. Vanderbei
Schittkowski
SolvOpt index page
SOL Optimization Software
Soplex
Source Code Collection, GA Archive
System Optimization
Windward Technologies, Inc.

Other

A Compilation of Automatic Differentiation Tools
ACM - The First Society in Computing
ACM Transactions on Mathematical Software
Bell Labs Computing Sciences Research Center
Catalog of Free Compilers and Interpreters
Computer Science -- Course Materials, CSCI 4676
Computing and Mathematical Sciences Research Division
DAISY- The Datasets
Expokit
Linear Equation, Optimization, other
FAQ- NUMERICAL ANALYSIS && ASSOCIATED FIELDS RESOURCE GUIDE
Fortran Software for Multiple Precision Arithmetic
FreeHEP
FREELY AVAILABLE SOFTWARE FOR
Fortran to Java (f2j) compiler
GAMS - Guide to Available Mathematical Software
GELDA Home Page
General Math FTP site
GMT - The Generic Mapping Tools
Graphics and analysis software
HDF Home Page (NCSA)
HotGAMS Home page
ICA - Institute for Computer Applications
IEEE Computational Science && Engineering
Index of -users-kumar-papers-
Interval Computations
Inverse Technique
Israel Association for Computational Methods in Mechanics
IVP Software by Francesca Mazzia and Felice Iavernaro
Kluwer Academic Publishers Information Server
Linear Algebra Software (LA-SW)
Linpack Benchmark -- Java Version
Math-Net Links - EXPERIMENTAL
Math-Web - Mathematical Software
Mathematical Programming Glossary
Mathematical Software Index
Mathematics Archives WWW Server
Mathematics Information Servers
Matrix Market
netCDF (Unidata )
METIS- Unstructured Graph Partitioning and Sparse Matrix Ordering System
NA-Net Home Page
NEOS Server
Netlib Repository at UTK-ORNL
NEW MCS Home Page
Numerical Analysis Page
Numerical methods
Numerical Recipes Home Page
Ordering System
ORNL MATHEMATICAL SCIENCES SECTION
Overview of M&&S Libraries
Parallel Iterative Methods
PSPASES Home Page
PLAPACK
PORT Mathematical Subroutine Library
Scilab Home Page
Singular Spectrum Analysis Toolkit
Softlib
SPAI [sparce matrix inversion]
SSG Home
Stephen P. Boyd
Stiff ODE solvers (Medovikov Alexei Arsenievich)
The Blitz++ Numerical Library Project Home Page
The Computational Differentiation Project
The Geometry Center Welcome Page
The HotList - Math Links.
The Object-Oriented Numerics Page
The Surface Evolver
The Swarm Simulation System
TOMACS Homepage
Vumate 1.0 Homepage
Welcome To SPEC
World of Mathematics and Computing
ZIB - Konrad-Zuse-Zentrum f�r Informationstechnik Berlin

Parallel Implementation

MPI

MPI - The Message Passing Interface Standard
Parallel Programming with MPI
W32MPI Home Page
Addendum to Scientific Supercomputing:

Welcome to Applied Parallel Research, Inc.
BSP Worldwide Home Page
Buxton House Research
Directory of -pub-Packages-BSP
Fortran Parallel Programming Systems
Kuck && Associates, Inc. (Optimizing and parallelization)
NetSolve Homepage
Parallel Algorithms Project Home Page
Parallel TRIWAQ
PLAPACK
PSIDE Home Page
PSPASES Home Page
Scientific Supercomputing:
The Bulk Synchronous Parallel (BSP) Model

PDE, Meshes, etc

Commercial

ANSYS WEB
Argus ONE
Innovative Research, Inc.
VECFEM
Welcome to Fluent Online. Fluent Inc. Computational fluid dynamics (CFD) software and services.

Aztec_main
--ELLPACK
Net //ELLPACK Homepage
ACE-gredit
Home Page of Anthony D. Martin (ADMesh)
Advanced Computing Research Institute (ACRI)
AMR in Fortran 90
AMRCLAW
BVP Software by Ross Wright and Jeff Cash
CFD codes list
CLAWPACK
Computational PDEs Unit: Software
Computer Science -- Course Materials, CSCI 4676
Cubit Mesh Generation Toolkit
Delaunay Triangulation
DIFFPACK (Numerical Objects Online)
DOPDEES Home Page
DOUG Home Page
FEAT (CFD in Fortran)
FEM2DLib Home Page
FEM Software
FEMLAB
FEMur - Finite Element Method Universal Resource
Finite Element People
FlexPDE PDE Solver
FMS-1d
FreeFEM a language for the finite element method ( 6-Feb-1996)
GEOMPACK (Directory of /pub/geompack)
Grid generation Software
GRUMMP
Home Page of Anthony D. Martin (ADMesh)
http---www.rz.uni-karlsruhe.de-~cadsol-
Information on finite element mesh generation
Internet Finite Element Resources
List of projects and meshing tools
LUGR
Mesh Generation && Grid Generation on the Web
MGNet
Moving-grid methods
MPSalsa
MUDPACK: Multigrid Software for Elliptic Partial Differential Equations
PDE Chapter
PDEase2D 3.0 Main Page
PDE2D
PDELAB
PDESOL Home Page (1D only)
PDESolve
PETSc - The Portable, Extensible Toolkit for Scientific Computation
PseudoPack Web Page
Publications at CWI
QMG project
Home page for Qhull
SciComp Inc.
Sturm-Liouville problem
The FElt Demo Document
The finite element method
The JOSTLE home page
Triangle- A Two-Dimensional Quality Mesh Generator
TOCHNOG
TriGrid Home Page
UG Homepage - Institute for Computer Applications III
Z88 by Dr. Frank Rieg (finite elements program)

Transforms

Discovering Wavelets Web Page

Visualization

Fortner Research - The Science Data Experts
Amtec Engineering Home Page (TECPLOT)
f90gl: Fortran interface for OpenGL and GLUT
FERRET Home Page
Intelligent Light and Fieldview (CFD Post Processing) - Home Page,
www.opengl.org
Open Inventor Products from TGS
ORNL MatView Project

Watershed-Hydrology

BASINS
Distributed Watershed Modeling Software
Environmental-Water Resources Computer Model Library
EPA HPPC Geohydrologic Modeling
HSPF
Hydrological Simulation Program-ARC (HSPA) Homepage
Patuxent Watershed model
UNCERT User's Manual
U.S. EPA CEAM Home Page
USGS Water Resources Applications Software